3D structure

PDB id
5LZE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
5LZE|1|A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZE_040 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.2318
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

5LZE|1|A|C|1043
5LZE|1|A|C|1044
5LZE|1|A|C|1045
5LZE|1|A|A|1046
5LZE|1|A|G|1047
5LZE|1|A|A|1048
5LZE|1|A|C|1049
5LZE|1|A|A|1050
5LZE|1|A|G|1051
*
5LZE|1|A|U|1108
5LZE|1|A|C|1109
5LZE|1|A|G|1110
5LZE|1|A|A|1111
5LZE|1|A|G|1112

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain G
50S ribosomal protein L6

Coloring options:


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