IL_5LZE_056

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

5LZE|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_056 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1048

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZE|1|A|U|1468
5LZE|1|A|A|1469
5LZE|1|A|A|1470
5LZE|1|A|G|1471
*
5LZE|1|A|U|1520
5LZE|1|A|G|1521
5LZE|1|A|A|1522
5LZE|1|A|U|1523
5LZE|1|A|G|1524

Current chains

Chain A

23S ribosomal RNA

Nearby chains