IL_5LZE_127

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5LZE|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_127 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1629

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5LZE|1|a|G|147
5LZE|1|a|G|148
5LZE|1|a|A|149
5LZE|1|a|U|150
5LZE|1|a|A|151
5LZE|1|a|A|152
5LZE|1|a|C|153
*
5LZE|1|a|G|168
5LZE|1|a|C|169
5LZE|1|a|U|170
5LZE|1|a|A|171
5LZE|1|a|A|172
5LZE|1|a|U|173
5LZE|1|a|A|174
5LZE|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20