3D structure

PDB id
5LZE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
5LZE|1|a|A|532, 5LZE|1|a|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZE_140 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.1464
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5LZE|1|a|G|515
5LZE|1|a|PSU|516
5LZE|1|a|G|517
5LZE|1|a|C|518
5LZE|1|a|C|519
5LZE|1|a|A|520
5LZE|1|a|G|521
*
5LZE|1|a|C|528
5LZE|1|a|G|529
5LZE|1|a|G|530
5LZE|1|a|U|531
5LZE|1|a|A|532
5LZE|1|a|A|533
5LZE|1|a|U|534
5LZE|1|a|A|535
5LZE|1|a|C|536

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12
Chain x
SECIS mRNA
Chain y
Selenocysteine transfer RNA

Coloring options:


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