IL_5LZE_140
3D structure
- PDB id
- 5LZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5LZE|1|a|A|532, 5LZE|1|a|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZE_140 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1464
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5LZE|1|a|G|515
5LZE|1|a|PSU|516
5LZE|1|a|G|517
5LZE|1|a|C|518
5LZE|1|a|C|519
5LZE|1|a|A|520
5LZE|1|a|G|521
*
5LZE|1|a|C|528
5LZE|1|a|G|529
5LZE|1|a|G|530
5LZE|1|a|U|531
5LZE|1|a|A|532
5LZE|1|a|A|533
5LZE|1|a|U|534
5LZE|1|a|A|535
5LZE|1|a|C|536
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain x
- SECIS mRNA
- Chain y
- Selenocysteine transfer RNA
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