IL_5LZE_141

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_141 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1126

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5LZE|1|a|C|569
5LZE|1|a|G|570
5LZE|1|a|U|571
5LZE|1|a|A|572
5LZE|1|a|A|573
5LZE|1|a|A|574
5LZE|1|a|G|575
*
5LZE|1|a|C|880
5LZE|1|a|G|881

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17