IL_5LZE_165

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

5LZE|1|a|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_165 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.14

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

5LZE|1|a|G|1124
5LZE|1|a|U|1125
5LZE|1|a|U|1126
5LZE|1|a|G|1127
5LZE|1|a|C|1128
*
5LZE|1|a|G|1144
5LZE|1|a|A|1145
5LZE|1|a|A|1146
5LZE|1|a|C|1147
5LZE|1|a|U|1148
5LZE|1|a|C|1149

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10