IL_5LZE_182

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_182 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2262

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5LZE|1|A|U|1474
5LZE|1|A|G|1475
5LZE|1|A|U|1476
5LZE|1|A|A|1477
5LZE|1|A|G|1478
*
5LZE|1|A|U|1513
5LZE|1|A|G|1514
5LZE|1|A|A|1515
5LZE|1|A|G|1516
5LZE|1|A|G|1517

Current chains

Chain A

23S ribosomal RNA

Nearby chains