IL_5LZE_184

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0915

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZE|1|A|U|1851
5LZE|1|A|U|1852
5LZE|1|A|A|1853
5LZE|1|A|A|1854
5LZE|1|A|U|1855
5LZE|1|A|U|1856
5LZE|1|A|G|1857
5LZE|1|A|A|1858
5LZE|1|A|U|1859
5LZE|1|A|G|1860
*
5LZE|1|A|U|1882
5LZE|1|A|U|1883
5LZE|1|A|G|1884
5LZE|1|A|A|1885
5LZE|1|A|U|1886
5LZE|1|A|C|1887
5LZE|1|A|G|1888
5LZE|1|A|A|1889
5LZE|1|A|A|1890
5LZE|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains