IL_5LZF_070

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5LZF|1|A|A|1801, 5LZF|1|A|C|1816, 5LZF|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_070 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.098

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5LZF|1|A|U|1798
5LZF|1|A|G|1799
5LZF|1|A|C|1800
5LZF|1|A|A|1801
5LZF|1|A|A|1802
5LZF|1|A|A|1803
5LZF|1|A|C|1804
*
5LZF|1|A|G|1813
5LZF|1|A|G|1814
5LZF|1|A|A|1815
5LZF|1|A|C|1816
5LZF|1|A|G|1817
5LZF|1|A|U|1818
5LZF|1|A|A|1819
5LZF|1|A|U|1820
5LZF|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA