IL_5LZF_076
3D structure
- PDB id
- 5LZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 5LZF|1|A|A|1938, 5LZF|1|A|U|1944
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZF_076 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.2099
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
5LZF|1|A|C|1934
5LZF|1|A|G|1935
5LZF|1|A|A|1936
5LZF|1|A|A|1937
5LZF|1|A|A|1938
5LZF|1|A|5MU|1939
5LZF|1|A|U|1940
5LZF|1|A|C|1941
5LZF|1|A|C|1942
5LZF|1|A|U|1943
5LZF|1|A|U|1944
5LZF|1|A|G|1945
*
5LZF|1|A|C|1961
5LZF|1|A|5MC|1962
5LZF|1|A|U|1963
5LZF|1|A|G|1964
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain y
- Selenocysteine transfer RNA
Coloring options: