IL_5LZF_129

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5LZF|1|a|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1769

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5LZF|1|a|G|147
5LZF|1|a|G|148
5LZF|1|a|A|149
5LZF|1|a|U|150
5LZF|1|a|A|151
5LZF|1|a|A|152
5LZF|1|a|C|153
*
5LZF|1|a|G|168
5LZF|1|a|C|169
5LZF|1|a|U|170
5LZF|1|a|A|171
5LZF|1|a|A|172
5LZF|1|a|U|173
5LZF|1|a|A|174
5LZF|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20