IL_5LZF_187

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.104

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZF|1|A|U|1851
5LZF|1|A|U|1852
5LZF|1|A|A|1853
5LZF|1|A|A|1854
5LZF|1|A|U|1855
5LZF|1|A|U|1856
5LZF|1|A|G|1857
5LZF|1|A|A|1858
5LZF|1|A|U|1859
5LZF|1|A|G|1860
*
5LZF|1|A|U|1882
5LZF|1|A|U|1883
5LZF|1|A|G|1884
5LZF|1|A|A|1885
5LZF|1|A|U|1886
5LZF|1|A|C|1887
5LZF|1|A|G|1888
5LZF|1|A|A|1889
5LZF|1|A|A|1890
5LZF|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA