IL_5LZS_142

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

5LZS|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_142 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1542

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5LZS|1|5|C|4582
5LZS|1|5|C|4583
5LZS|1|5|A|4584
5LZS|1|5|U|4585
*
5LZS|1|5|A|4717
5LZS|1|5|G|4718
5LZS|1|5|G|4719
5LZS|1|5|C|4720
5LZS|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13