IL_5LZS_187

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

5LZS|1|9|U|305, 5LZS|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_187 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3887

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5LZS|1|9|C|216
5LZS|1|9|A|217
5LZS|1|9|U|218
5LZS|1|9|U|219
*
5LZS|1|9|A|302
5LZS|1|9|C|303
5LZS|1|9|C|304
5LZS|1|9|U|305
5LZS|1|9|C|306
5LZS|1|9|G|307
5LZS|1|9|G|308
5LZS|1|9|G|309

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain II

40S ribosomal protein S8