IL_5LZS_220

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_220 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1641

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LZS|1|9|G|942
5LZS|1|9|U|943
5LZS|1|9|A|944
5LZS|1|9|U|945
*
5LZS|1|9|A|981
5LZS|1|9|G|982
5LZS|1|9|A|983
5LZS|1|9|C|984

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain A

uL2

Chain BB

40S ribosomal protein S3a

Chain OO

uS11