IL_5LZT_081

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

5LZT|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_081 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1991

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5LZT|1|5|U|1957
5LZT|1|5|A|1958
5LZT|1|5|U|1959
5LZT|1|5|A|1960
5LZT|1|5|G|1961
5LZT|1|5|A|1962
5LZT|1|5|C|1963
5LZT|1|5|A|1964
5LZT|1|5|G|1965
*
5LZT|1|5|C|2022
5LZT|1|5|C|2023
5LZT|1|5|G|2024
5LZT|1|5|A|2025
5LZT|1|5|A|2026

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S

eL20

Chain m

eL40

Chain s

uL10