IL_5LZT_190

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

5LZT|1|9|U|305, 5LZT|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_190 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3947

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5LZT|1|9|C|216
5LZT|1|9|A|217
5LZT|1|9|U|218
5LZT|1|9|U|219
*
5LZT|1|9|A|302
5LZT|1|9|C|303
5LZT|1|9|C|304
5LZT|1|9|U|305
5LZT|1|9|C|306
5LZT|1|9|G|307
5LZT|1|9|G|308
5LZT|1|9|G|309

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8