IL_5LZT_207

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5LZT|1|9|A|628, 5LZT|1|9|U|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_207 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1246

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5LZT|1|9|G|611
5LZT|1|9|U|612
5LZT|1|9|G|613
5LZT|1|9|C|614
5LZT|1|9|C|615
5LZT|1|9|A|616
5LZT|1|9|G|617
*
5LZT|1|9|C|624
5LZT|1|9|G|625
5LZT|1|9|G|626
5LZT|1|9|U|627
5LZT|1|9|A|628
5LZT|1|9|A|629
5LZT|1|9|U|630
5LZT|1|9|U|631
5LZT|1|9|C|632

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain XX

uS12

Chain ee

eS30

Chain hh

mRNA (UGA stop codon)

Chain ii

eRF1