3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GGG*UAAUC
Length
8 nucleotides
Bulged bases
5LZU|1|5|G|1625, 5LZU|1|5|A|1637, 5LZU|1|5|A|1638
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_059 not in the Motif Atlas
Geometric match to IL_5TBW_033
Geometric discrepancy: 0.0848
The information below is about IL_5TBW_033
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_90991.8
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

5LZU|1|5|G|1624
5LZU|1|5|G|1625
5LZU|1|5|G|1626
*
5LZU|1|5|U|1636
5LZU|1|5|A|1637
5LZU|1|5|A|1638
5LZU|1|5|U|1639
5LZU|1|5|C|1640

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain N
Ribosomal protein L15
Chain P
uL22
Chain j
Ribosomal protein L37

Coloring options:


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