3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UUAAG*CCAUA
Length
10 nucleotides
Bulged bases
5LZU|1|5|U|2070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_074 not in the Motif Atlas
Homologous match to IL_5TBW_048
Geometric discrepancy: 0.1233
The information below is about IL_5TBW_048
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

5LZU|1|5|U|1905
5LZU|1|5|U|1906
5LZU|1|5|A|1907
5LZU|1|5|A|1908
5LZU|1|5|G|1909
*
5LZU|1|5|C|2067
5LZU|1|5|C|2068
5LZU|1|5|A|2069
5LZU|1|5|U|2070
5LZU|1|5|A|2071

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain F
uL30
Chain Q
eL18
Chain e
eL32
Chain f
eL33

Coloring options:


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