IL_5LZU_094

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_094 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2234

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5LZU|1|5|C|2589
5LZU|1|5|G|2590
5LZU|1|5|A|2591
5LZU|1|5|U|2592
5LZU|1|5|C|2593
*
5LZU|1|5|G|2752
5LZU|1|5|G|2753
5LZU|1|5|G|2754
5LZU|1|5|A|2755
5LZU|1|5|G|2756

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain Z

60S ribosomal protein L27

Chain g

eL34