IL_5LZU_128

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_128 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2626

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LZU|1|5|U|4295
5LZU|1|5|U|4296
5LZU|1|5|G|4297
5LZU|1|5|A|4298
*
5LZU|1|5|U|4312
5LZU|1|5|A|4313
5LZU|1|5|C|4314
5LZU|1|5|A|4315

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain Q

eL18

Chain T

eL21

Chain b

eL29

Chain o

eL42