IL_5LZU_190

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

5LZU|1|9|U|305, 5LZU|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_190 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3961

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5LZU|1|9|C|216
5LZU|1|9|A|217
5LZU|1|9|U|218
5LZU|1|9|U|219
*
5LZU|1|9|A|302
5LZU|1|9|C|303
5LZU|1|9|C|304
5LZU|1|9|U|305
5LZU|1|9|C|306
5LZU|1|9|G|307
5LZU|1|9|G|308
5LZU|1|9|G|309

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain II

40S ribosomal protein S8