IL_5LZU_209

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5LZU|1|9|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_209 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1624

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5LZU|1|9|G|665
5LZU|1|9|U|666
5LZU|1|9|U|667
5LZU|1|9|A|668
5LZU|1|9|A|669
5LZU|1|9|A|670
5LZU|1|9|A|671
*
5LZU|1|9|U|1161
5LZU|1|9|C|1162

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain XX

uS12

Chain aa

eS26