IL_5LZU_235

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5LZU|1|9|C|1215, 5LZU|1|9|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_235 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.134

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

5LZU|1|9|A|1214
5LZU|1|9|C|1215
5LZU|1|9|C|1216
5LZU|1|9|A|1217
*
5LZU|1|9|U|1681
5LZU|1|9|C|1682
5LZU|1|9|C|1683
5LZU|1|9|C|1684
5LZU|1|9|U|1685

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 3

Transfer RNA; tRNA

Chain FF

uS7

Chain QQ

uS9

Chain aa

eS26

Chain cc

eS28

Chain hh

mRNA (UGA stop codon)