IL_5LZV_016

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

5LZV|1|5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_016 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.2706

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

5LZV|1|5|C|339
5LZV|1|5|C|340
5LZV|1|5|G|341
5LZV|1|5|G|342
*
5LZV|1|8|C|32
5LZV|1|8|G|33

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain C

uL4

Chain L

eL13

Chain N

eL15

Chain j

eL37