IL_5LZV_079

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

5LZV|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_079 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.2153

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5LZV|1|5|U|1957
5LZV|1|5|A|1958
5LZV|1|5|U|1959
5LZV|1|5|A|1960
5LZV|1|5|G|1961
5LZV|1|5|A|1962
5LZV|1|5|C|1963
5LZV|1|5|A|1964
5LZV|1|5|G|1965
*
5LZV|1|5|C|2022
5LZV|1|5|C|2023
5LZV|1|5|G|2024
5LZV|1|5|A|2025
5LZV|1|5|A|2026

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain m

eL40

Chain s

uL10