IL_5LZV_153

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_153 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2308

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5LZV|1|5|U|4885
5LZV|1|5|C|4886
5LZV|1|5|C|4887
5LZV|1|5|C|4888
*
5LZV|1|5|G|4931
5LZV|1|5|U|4932
5LZV|1|5|C|4933
5LZV|1|5|A|4934

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

eL6

Chain M

eL14