IL_5LZV_180

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

5LZV|1|9|G|113, 5LZV|1|9|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_180 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1403

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5LZV|1|9|U|112
5LZV|1|9|G|113
5LZV|1|9|G|114
5LZV|1|9|U|115
*
5LZV|1|9|A|348
5LZV|1|9|A|349

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8

Chain LL

uS17