IL_5LZV_206

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5LZV|1|9|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_206 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1554

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5LZV|1|9|G|665
5LZV|1|9|U|666
5LZV|1|9|U|667
5LZV|1|9|A|668
5LZV|1|9|A|669
5LZV|1|9|A|670
5LZV|1|9|A|671
*
5LZV|1|9|U|1161
5LZV|1|9|C|1162

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain XX

uS12

Chain aa

eS26