IL_5LZV_208

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_208 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.086

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5LZV|1|9|C|676
5LZV|1|9|G|677
5LZV|1|9|U|678
5LZV|1|9|A|679
5LZV|1|9|G|680
*
5LZV|1|9|U|1025
5LZV|1|9|C|1026
5LZV|1|9|A|1027
5LZV|1|9|A|1028
5LZV|1|9|G|1029

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain LL

uS17

Chain NN

uS15

Chain WW

uS8

Chain XX

uS12