IL_5LZV_216

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_216 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.1951

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LZV|1|9|C|876
5LZV|1|9|C|877
5LZV|1|9|G|878
5LZV|1|9|C|879
*
5LZV|1|9|G|907
5LZV|1|9|A|908
5LZV|1|9|G|909
5LZV|1|9|G|910

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

eS7

Chain R

eL19