IL_5LZV_255

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

5LZV|1|9|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_255 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3024

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5LZV|1|9|C|1708
5LZV|1|9|G|1709
5LZV|1|9|C|1710
5LZV|1|9|U|1711
*
5LZV|1|9|A|1822
5LZV|1|9|A|1823
5LZV|1|9|A|1824
5LZV|1|9|A|1825
5LZV|1|9|G|1826

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain XX

uS12

Chain hh

mRNA (UGA stop codon)

Chain ii

eRF1(AAQ)

Chain n

eL41