IL_5LZW_163

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

5LZW|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_163 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1626

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5LZW|1|5|G|5000
5LZW|1|5|U|5001
5LZW|1|5|U|5002
*
5LZW|1|5|G|5045
5LZW|1|5|U|5046
5LZW|1|5|C|5047
5LZW|1|5|A|5048
5LZW|1|5|G|5049
5LZW|1|5|C|5050

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain d

eL31