IL_5LZX_078
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 5LZX|1|5|U|1930, 5LZX|1|5|C|1931, 5LZX|1|5|G|2055, 5LZX|1|5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZX_078 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1419
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5LZX|1|5|C|1926
5LZX|1|5|U|1927
5LZX|1|5|C|1928
5LZX|1|5|A|1929
5LZX|1|5|U|1930
5LZX|1|5|C|1931
5LZX|1|5|A|1932
5LZX|1|5|G|1933
*
5LZX|1|5|C|2053
5LZX|1|5|U|2054
5LZX|1|5|G|2055
5LZX|1|5|G|2056
5LZX|1|5|A|2057
5LZX|1|5|G|2058
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- uL6
- Chain M
- eL14
- Chain O
- uL13
- Chain S
- eL20
- Chain m
- eL40
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