IL_5LZX_094

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_094 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.2608

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5LZX|1|5|C|2589
5LZX|1|5|G|2590
5LZX|1|5|A|2591
5LZX|1|5|U|2592
5LZX|1|5|C|2593
*
5LZX|1|5|G|2752
5LZX|1|5|G|2753
5LZX|1|5|G|2754
5LZX|1|5|A|2755
5LZX|1|5|G|2756

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain Z

60S ribosomal protein L27

Chain g

eL34