IL_8C3A_073

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95716.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8C3A|1|1|U|1641
8C3A|1|1|G|1642
8C3A|1|1|A|1643
8C3A|1|1|A|1644
8C3A|1|1|U|1645
*
8C3A|1|1|A|1802
8C3A|1|1|G|1803
8C3A|1|1|G|1804
8C3A|1|1|A|1805
8C3A|1|1|A|1806

Current chains

Chain 1

25S

Nearby chains

Chain AA

60S ribosomal protein L27

Chain AH

60S ribosomal protein L34-B

Chain j

60S ribosomal protein L2-B