IL_5LZX_145
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZX_145 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0834
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5LZX|1|5|C|4596
5LZX|1|5|U|4597
5LZX|1|5|C|4598
5LZX|1|5|A|4599
5LZX|1|5|G|4600
5LZX|1|5|U|4601
5LZX|1|5|A|4602
5LZX|1|5|C|4603
*
5LZX|1|5|G|4608
5LZX|1|5|G|4609
5LZX|1|5|A|4610
5LZX|1|5|A|4611
5LZX|1|5|C|4612
5LZX|1|5|C|4613
5LZX|1|5|G|4614
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ul3
- Chain H
- uL6
- Chain V
- uL14
- Chain ii
- Protein pelota homolog
- Chain jj
- HBS1-like protein
- Chain m
- eL40
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