IL_5LZX_188

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

5LZX|1|9|U|305, 5LZX|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_188 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3988

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5LZX|1|9|C|216
5LZX|1|9|A|217
5LZX|1|9|U|218
5LZX|1|9|U|219
*
5LZX|1|9|A|302
5LZX|1|9|C|303
5LZX|1|9|C|304
5LZX|1|9|U|305
5LZX|1|9|C|306
5LZX|1|9|G|307
5LZX|1|9|G|308
5LZX|1|9|G|309

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8