IL_5LZX_206

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5LZX|1|9|A|628, 5LZX|1|9|U|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_206 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.4076

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5LZX|1|9|G|611
5LZX|1|9|U|612
5LZX|1|9|G|613
5LZX|1|9|C|614
5LZX|1|9|C|615
5LZX|1|9|A|616
5LZX|1|9|G|617
*
5LZX|1|9|C|624
5LZX|1|9|G|625
5LZX|1|9|G|626
5LZX|1|9|U|627
5LZX|1|9|A|628
5LZX|1|9|A|629
5LZX|1|9|U|630
5LZX|1|9|U|631
5LZX|1|9|C|632

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain XX

uS12

Chain ee

eS30

Chain ii

Protein pelota homolog