IL_5LZX_234
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5LZX|1|9|C|1215, 5LZX|1|9|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZX_234 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1299
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5LZX|1|9|A|1214
5LZX|1|9|C|1215
5LZX|1|9|C|1216
5LZX|1|9|A|1217
*
5LZX|1|9|U|1681
5LZX|1|9|C|1682
5LZX|1|9|C|1683
5LZX|1|9|C|1684
5LZX|1|9|U|1685
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain FF
- uS7
- Chain QQ
- uS9
- Chain aa
- eS26
- Chain cc
- eS28
- Chain hh
- mRNA (UGA stop codon)
Coloring options: