IL_5LZX_243
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5LZX|1|9|U|1494, 5LZX|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZX_243 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1298
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5LZX|1|9|U|1333
5LZX|1|9|G|1334
5LZX|1|9|G|1335
*
5LZX|1|9|U|1492
5LZX|1|9|C|1493
5LZX|1|9|U|1494
5LZX|1|9|G|1495
5LZX|1|9|U|1496
5LZX|1|9|G|1497
5LZX|1|9|A|1498
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain DD
- uS3
- Chain KK
- eS10
- Chain UU
- uS10
- Chain dd
- uS14
- Chain ii
- Protein pelota homolog
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