IL_5LZX_252
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 5LZX|1|9|A|1580, 5LZX|1|9|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZX_252 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2237
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZX|1|9|G|1550
5LZX|1|9|U|1551
5LZX|1|9|G|1552
5LZX|1|9|C|1553
5LZX|1|9|C|1554
5LZX|1|9|U|1555
5LZX|1|9|A|1556
5LZX|1|9|C|1557
5LZX|1|9|C|1558
*
5LZX|1|9|G|1577
5LZX|1|9|U|1578
5LZX|1|9|A|1579
5LZX|1|9|A|1580
5LZX|1|9|C|1581
5LZX|1|9|C|1582
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain DD
- uS3
- Chain KK
- eS10
- Chain TT
- eS19
- Chain UU
- uS10
- Chain dd
- uS14
Coloring options: