IL_5LZY_030

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CUCCC*GUCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_030 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2549

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5LZY|1|5|C|519
5LZY|1|5|U|520
5LZY|1|5|C|521
5LZY|1|5|C|522
5LZY|1|5|C|523
*
5LZY|1|5|G|638
5LZY|1|5|U|639
5LZY|1|5|C|640
5LZY|1|5|G|641
5LZY|1|5|G|642

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13