IL_5LZY_054

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_054 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1275

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5LZY|1|5|C|1551
5LZY|1|5|G|1552
5LZY|1|5|A|1553
5LZY|1|5|A|1554
5LZY|1|5|G|1555
*
5LZY|1|5|U|1572
5LZY|1|5|G|1573
5LZY|1|5|G|1574
5LZY|1|5|A|1575
5LZY|1|5|G|1576

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

eL43