IL_5LZY_078

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5LZY|1|5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_078 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1743

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5LZY|1|5|G|2001
5LZY|1|5|A|2002
5LZY|1|5|G|2003
5LZY|1|5|U|2004
5LZY|1|5|G|2005
*
5LZY|1|5|C|2014
5LZY|1|5|U|2015
5LZY|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain s

uL10

Chain t

uL11