IL_5LZY_101

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5LZY|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_101 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0885

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5LZY|1|5|C|2867
5LZY|1|5|G|2868
5LZY|1|5|U|2869
5LZY|1|5|A|2870
5LZY|1|5|A|2871
5LZY|1|5|C|2872
*
5LZY|1|5|G|2877
5LZY|1|5|G|2878
5LZY|1|5|A|2879
5LZY|1|5|U|2880
5LZY|1|5|A|2881
5LZY|1|5|A|2882
5LZY|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43