IL_5LZY_113

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5LZY|1|5|A|3785, 5LZY|1|5|C|3791, 5LZY|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_113 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.094

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZY|1|5|C|3781
5LZY|1|5|C|3782
5LZY|1|5|A|3783
5LZY|1|5|A|3784
5LZY|1|5|A|3785
5LZY|1|5|U|3786
5LZY|1|5|G|3787
5LZY|1|5|C|3788
5LZY|1|5|C|3789
5LZY|1|5|U|3790
5LZY|1|5|C|3791
5LZY|1|5|G|3792
*
5LZY|1|5|C|3808
5LZY|1|5|G|3809
5LZY|1|5|C|3810
5LZY|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41