IL_5LZY_145

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

5LZY|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_145 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.2494

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

5LZY|1|5|A|4681
5LZY|1|5|U|4682
5LZY|1|5|U|4683
5LZY|1|5|A|4684
5LZY|1|5|U|4685
*
5LZY|1|5|A|4705
5LZY|1|5|G|4706
5LZY|1|5|A|4707
5LZY|1|5|A|4708
5LZY|1|5|U|4709

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40