IL_5LZY_189

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

5LZY|1|9|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_189 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1256

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5LZY|1|9|G|411
5LZY|1|9|G|412
5LZY|1|9|G|413
*
5LZY|1|9|C|424
5LZY|1|9|G|425
5LZY|1|9|A|426
5LZY|1|9|U|427
5LZY|1|9|U|428
5LZY|1|9|C|429

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12